G'day Joey,
Following the Shop Manual will save you a lot of time.
I found it easier to remove the Engine/Trans/Diff as a complete unit, then separate the engine from the trans on the bench/floor.
After removing the hood.
(1) With the car outside of the working area, if you have to drain the water onto the ground, drain the radiator by either removing the bottom radiator hose, or turning on the drain cock at the bottom left side of the radiator.
(2) Move the car back into the working area, and disconnect the battery terminals (Leaving the battery in place), remove the Radiator Cover/top mounts, Hoses, Transmission Cooler Line fittings, and then the Radiator, Fan Shroud pieces, Fan, Drive Belts, Crankshaft Pulley.
(3) Place some rags on top of the Battery to protect the terminals, if you have a top post battery, remove the 5 bolts holding the A/C Compressor to the engine, and with care, and without undoing any of the A/C hoses, lift and roll the attached compressor over and upside down and lay it on top of the Battery.
(4) Remove the Power Steering Pump and lay it off to the left side where it will simply sit there out of the way. The Alternator now comes off, and lays to the right (you did undo the wiring?)
(5) Remove the FI Throttle Body, (if you are going to use my method of lifting) Fuel lines to the Fuel Pump, and plug them to stop the possibility of fuel leaking out, or dirt getting in. Remove the Ground Strap from the trans to the firewall (it is plugged into the firewall)
(6) Remove Left Exhaust Manifold from both the engine and engine pipe, but only remove the Right Exhaust Manifold from the Cylinder Head. This can stay attached to the Engine Pipe. Remove the Speedo Cable
(7) If your car has the diagonal braces from the firewall to the inner fenders, remove these.
(

Now it is time to get down and dirty. Raise the car and insert jack stands.
(9) Undo the inner Tripot axle joints and push the joints apart for clearance, undo the engine and Trans mount nuts, 2 in front and one each side at the rear. Remove the positive cable from the Starter Motor and unclip the Starter Motor Solenoid to body harness plug. Undo the trans linkage, and the Starter Motor to Chassis Ground Strap.
The engine combo is now ready to come out. And the car can go back onto the ground.
(10) I positioned the engine mounting brackets in their rearmost position as this balances the massive weight, as you will see in the picture. The lifting chain is also off-set, and tied in that position. IT MUST NOT SLIP.
(10) As the engine is lifted, it is necessary to remove the trans mounting cover plate, and carefully slip it out of the way. There are only three bolts holding this to the back of the unit, and once undone, it is awkward and heavy, so care is needed to juggle it.
(11) I found it necessary to remove one of the Windscreen Wiper wiring plugs to gain clearance from the rear trans chain cover as it passed by, and with a little bit of careful juggling, moving and hoisting, it will come out without damaging anything.
There will be some things I have missed, or messed up. But, basically, it is how I did it.
LASTLY, if you take out the axles from the hubs, do not roll the car on the wheels or the bearings will pop out.
Bruce.

PS. Why are you removing the engine?